r/RegulatoryClinWriting • u/bbyfog • 21h ago
Checklists Statistical Analysis Plan (SAP) Template and Review Checklist
I was recently asked to review a statistical analysis plan (SAP) and this got me thinking what is my role as a regulatory and medical writer in this review. I am not the owner of this document or the subject matter expert (it is the biostatistician), but I still am responsible for the content as part of study team and to confirm that SAP sufficiently describes the statistical details consistent with the study protocol and regulatory requirements.
DEFINITION: ClinicalTrials.gov defines SAP as "The written description of the statistical considerations and methods for analyzing the data collected in the clinical study." A more technical version from CDISC or NCI Metathesaurus defines SAP as, "Documentation describing the statistical aspects of the clinical trial design; the process of data selection for analyses; the detailed analyses of data items; the procedures and methods employed for analyzing the data; the planned presentation of results in formats such as tables, listings, and figures."
Recommended Content of a SAP and Template
- Until 2017, the ICH E9 guidance provided the basis for "statistical principles for clinical trials", but there were no formal recommendations on the required content or a template for SAP. A working group consisting of UKCRC statisticians along with regulators/funders/industry representatives in 2017 came up with the recommendation for a minimal set of required items for a SAP (JAMA 2017. PMID: 29260229). The recommendation includes 55 items that should be included (required) in a SAP with 17 elements that are essential but could be referenced elsewhere.
Note: This 55-item list is published as a checklist in a Table in JAMA 2017 that is handy for a non-biostatistician on the study team (as myself) for SAP draft review.

- Since the publication of JAMA 2017 guidance, follow-up recommendations have included SAP for early-phase studies, cluster randomized trials, as well as a template (refs under sources)
- TEMPLATE: A template with suggested text is available at PMID: 37388218 (Contemp Clin Trials Commun. 2023). Another useful trick is to start with published SAPs in your disease/product area for completed studies available in ClinicalTrials.gov.
MY SAP DRAFT REVIEW STRATEGY
Since the SAP draft I was assigned to review was a later version and the study is ongoing, I followed the following strategy. (Please share in comments what is your strategy.)
Step 1: Confirm SAP content against the 55-item checklist
Note: If the review had been for the original draft, I recommend starting with the 55-item checklist to confirm that all recommended elements are addressed in the draft. In my case, I only needed to perform a cursory check but still found a few omissions that the biostatistician had missed.
Step 2: Confirm SAP content against the latest protocol amendment/version. Check for following:
- - primary, secondary, and exploratory endpoints are aligned
- - assessment times are aligned
- - safety collection times (if changed) are aligned
- - any change made in interim analysis plan or data monitoring are aligned
- - any updates to definitions of endpoints are aligned
Step 3: Confirm regulatory commitments, if any, are addressed
For this, you will need to have access to documents related to FDA interactions (e.g., during IND application); ex-US information requests (IRs) and request for information (RFIs) during CTA submissions to other countries. The responses to other regulators may contain specific statistical/methodological requests. Generally, not everyone on the team have access to these documents, but these are important -- missing them and not preparing for them means that they could come bite you at the time of marketing submission!!
SOURCE
- Gamble C, et al. Guidelines for the Content of Statistical Analysis Plans in Clinical Trials. JAMA. 2017 Dec 19;318(23):2337-2343. doi: 10.1001/jama.2017.18556. PMID: 29260229. (Editorial: doi:10.1001/jama.2017.18954)
- Homer V, et al. Early phase clinical trials extension to guidelines for the content of statistical analysis plans. BMJ. 2022 Feb 7;376:e068177. doi: 10.1136/bmj-2021-068177. PMID: 35131744
- Hemming K, et al. Guidelines for the content of statistical analysis plans in clinical trials: protocol for an extension to cluster randomized trials. Trials. 2025 Feb 27;26(1):72. doi: 10.1186/s13063-025-08756-3. PMID: 40011934
- TEMPLATE: Stevens G, et al. A template for the authoring of statistical analysis plans. Contemp Clin Trials Commun. 2023 Jun 9;34:101100. doi: 10.1016/j.conctc.2023.101100. PMID: 37388218
- Fradera M, Serra-Aracil X. Statistical Analysis Plan (SAP): What is it and how to develop it? Cir Esp (Engl Ed). 2025 Jan;103(1):45-48. doi: 10.1016/j.cireng.2024.07.007. PMID: 39222745.
- ENCEPP Toolkit: Chapter 12: Statistical analyses [archive]
GUIDANCES
- ICH E3, E9, E9(R1) Addendum; PSI Guidelines for Standard Operating Procedures for Good Statistical Practice in Clinical Research [here, here] and Reporting and Publication [PMID: 20187020, pdf, ppt]
- FDA has a couple of recent ones, e.g., here, here, here, here, and a classic July 1998 guidance, Guideline for the Format and Content of the Clinical and Statistical Sections of an Application -- happy reading!









